With huge thanks to partners including Rutgers Cooperative Extension of Middlesex County, the Fahrenfeld Lab at Rutgers – The State University of New Jersey, and NJ Sea Grant, the LRWP is pleased to share that findings based on our Summer Raritan River civic science pathogens monitoring and data gathering efforts were published by Elsevier in Science of the Total Environment:

Ehasz, G., Almosd, L., Ahamed, P., Bakacs, M., Fenyk, H., Fahrenfeld, N.L.  2026.  Comparison of propidium monoazide and total-DNA based qPCR and long-read sequencing for microbial source tracking in an estuarine river. Science of the Total Environment. 1013, 181271.  10.1016/j.scitotenv.2025.181271

Recap: Fecal pollution from humans and birds was identified using DNA-based techniques in the Lower Raritan. Fecal pollution is a common cause of beach and shellfish harvest closures and microbial source tracking can help identify the source of this pollution. A NJ Sea Grant funded team from Rutgers, Middlesex County Extension, and the Lower Raritan Watershed Partnership conducted microbial monitoring on the Lower Raritan River. Multiple techniques for fecal source tracking were tested and compared.

Results: Microbial pollution in the Lower Raritan was linked to both human and bird sources using both qPCR and microbiome-based techniques that focus on living cells rather than total DNA. Results were shared with local utilities and governmental agencies who can find solutions for these pollution sources. The techniques demonstrated in the Lower Raritan can be applied in any watershed with fecal pollution
issues.